Course Schedule:
July 8, Participants arrive
July 9-10, David Maddison:
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• Mesquite Introduction
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• Scripting, Pipelining, Interfacing with Mesquite
July 11-12, Sergei Pond and Spencer Muse
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• HyPhy Intro
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• Scripting with HyPhy
July 13-16, Rutger Vos & Jason Stajich (Perl); Stephen Smith & Jeff Oliver (Java):
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• Object-oriented programming overview and intro
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• Sequences, Alignments, Trees
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• Distances, substitution rates, optimization
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• Harvesting data from data services, workflows
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• Writing a Mesquite module (Java)
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• CIPRES & Bio::Phylo environments (Perl)
July 17-18, Hilmar Lapp; Bill Piel
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• Intro to SQL
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• Using the DBI (Perl); using JDBC (Java)
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• Complex Queries & BioSQL
July 19, Bill Piel
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• Participants wrap up their projects/exercises
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• Departures to the airport occur throughout the day